datajoely10/22/2021, 2:28 PM
In the next major version things will be simplified into the following: 1.
is still going to prepare
so that the dependencies are fully resolved. 2. We then recommend running
to install your compiled dependencies. I'm pretty sure
pip install -r src/requirements.txt
will work here too, but we do know that conda sometimes has issues with the kedro optional dependencies like
pip install "kedro[pandas]"
Edmund M10/22/2021, 2:31 PM
So the requirements.txt is untouched for now from
yaml name: groseq-analysis channels: - r - conda-forge - bioconda dependencies: - python=3.7 - pip - pip: - -r requirements.txt # Extras - r-base - rpy2 - r-r.utils - r-essentials - bioconductor-genomicranges - bioconductor-genomicscores - bioconductor-phastCons100way.UCSC.hg19
datajoely10/22/2021, 2:54 PM
antony.milne10/22/2021, 3:25 PM
currently does (badly) a conda update from environment.yml. In 0.18 when
is removed, if you want to use conda you'll need to write the
command yourself - that should work exactly the same as it does now if you're already doing it that way
Anish Shah @ WANDB11/04/2021, 1:06 AM
datajoely11/04/2021, 6:50 AM
in the next version and basically just provide the
functionality. Lastly, there is nothing stopping you using poetry - but it does make it easier for us in the dev team having a flow we can support easily.
antony.milne11/04/2021, 12:31 PM